Software
Open-source tools developed by the lab members for microbial identification and metagenomic analysis.
CCMetagen
A comprehensive and accurate microbiome classification pipeline for the identification of eukaryotes and prokaryotes in metagenomic data.
expam
Phylogenetic Analysis of Shotgun Metagenomic Data. High-resolution analysis of metagenomes using distance trees.
metaphor
A streamlined workflow and metagenomics pipeline for the assembly and binning of short reads.
ChloroScan
A bioinformatics pipeline to recover eukaryotic plastid genome bins from metagenomic data, using deep learning contig classification and a curated plastid marker gene database to guide binning.